Growing Graphs with Hyperedge Replacement Graph Grammars

Discovering the underlying structures present in large real world graphs is a fundamental scientific problem. In this paper we show that a graph's clique tree can be used to extract a hyperedge replacement grammar. If we store an ordering from the extraction process, the extracted graph grammar is guaranteed to generate an isomorphic copy of the original graph. Or, a stochastic application of the graph grammar rules can be used to quickly create random graphs. In experiments on large real world networks, we show that random graphs, generated from extracted graph grammars, exhibit a wide range of properties that are very similar to the original graphs. In addition to graph properties like degree or eigenvector centrality, what a graph "looks like" ultimately depends on small details in local graph substructures that are difficult to define at a global level. We show that our generative graph model is able to preserve these local substructures when generating new graphs and performs well on new and difficult tests of model robustness.Comment: 18 pages, 19 figures, accepted to CIKM 2016 in Indianapolis, I

Algorithm and Experiments in Testing Planar Graphs for Isomorphism

We give an algorithm for isomorphism testing of planar graphs suitable for practical implementation. The algorithm is based on the decomposition of a graph into biconnected components and further into SPQR-trees. We provide a proof of the algorithm’s correctness and a complexity analysis. We determine the conditions in which the implemented algorithm outperforms other graph matchers, which do not impose topological restrictions on graphs. We report experiments with our planar graph matcher tested against McKay’s, Ullmann’s, and SUBDUE’s (a graph-based data mining system) graph matchers

INFERENCE OF EDGE REPLACEMENT GRAPH GRAMMARS

We describe an algorithm and experiments for inference of edge replacement graph grammars. This method generates candidate recursive graph grammar productions based on isomorphic subgraphs which overlap by two nodes. If there is no edge between the two overlapping nodes, the method generates a recursive graph grammar production with a virtual edge. We guide the search for the graph grammar based on the size of the grammar and the portion of the graph described by the grammar. We show experiments where we generate graphs from known graph grammars, use our method to infer the grammar from the generated graphs, and then measure the error between the original and inferred grammars. Experiments show that the method performs well on several types of grammars, and specifically that error decreases with increased numbers of unique labels in the graph

Abstract Inference of Node Replacement Recursive Graph Grammars

In this paper we describe an approach to learning node replacement graph grammars. This approach is based on previous research in frequent isomorphic subgraphs discovery. We extend the search for frequent subgraphs by checking for overlap among the instances of the subgraphs in the input graph. If subgraphs overlap by one node we propose a node replacement grammar production. We also can infer a hierarchy of productions by compressing portions of a graph described by a production and then infer new productions on the compressed graph. We validate this approach in experiments where we generate graphs from known grammars and measure how well our system infers the original grammar from the generated graph